Graph laplacian — the ladder
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A matrix with no numbers in it
A graph arrives as vertices and edges. Two different matrices can be built from it, they answer different questions, and one of them has a null vector that is exact — the only object on this site whose kernel is known before anything runs.
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Two Laplacians of one graph
D − A and D^{-1/2}(D − A)D^{-1/2} are built from the same object, are not similar to each other, and answer different questions. On a graph whose degrees are equal they coincide. On one whose degrees span an order of magnitude their second eigenvalues are sixteen times apart.
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The vertex nobody solves for
A Laplacian is singular, so every solve with one has to remove its kernel first. There are three ways, they agree to fourteen digits, and the one everybody uses carries a free parameter that no account of the method mentions and that moves the condition number by nine hundred.