Concept

Symbolic factorisation — where it appears

The phase that computes a sparse factor's nonzero pattern from the matrix's graph before any arithmetic. What it produces is a bound rather than a prediction, since an entry it allocates may turn out to be numerically zero.

Named by 19 essays across 4 fields — each of them below, with the objects they name alongside it.

the matrix, lower triangle408 entriesits Cholesky factor1739 entries · 1331 created→‖A − LLᵀ‖/‖A‖1.4·10⁻¹⁶fill, symbolic1331fill, numeric1331n = 144 · density 3.2% · bandwidth 12same matrix, renumberedthe answer is identical to rounding

The factor is not sparse

A sparse matrix has a factor that is not sparse, and the gap between them is the entire reason iterative methods exist. The entries elimination creates can be counted before any arithmetic runs, from the graph alone.

sparsity · Fill
the matrix105 entriescorner first — sparsest227 entries, growth 1.9·10¹¹largest first — safe242 entries, growth 1.19the middle factor is the smaller one, and its answer has no correct digitsboth factorisations reproduce the matrix‖PA − LU‖/‖A‖, sparsest3.8·10⁻¹⁷‖PA − LU‖/‖A‖, pivoted5.4·10⁻¹⁷forward error, sparsest3·10⁻⁵forward error, pivoted4.8·10⁻¹⁶red marks are entries elimination createdthe fill argument and the stability argument disagree

Structure and stability stop being separable

The sparsest variable to eliminate on this matrix has a diagonal entry of 10⁻¹². Eliminating it produces the smaller factor, reproduces the matrix to 3.8·10⁻¹⁷ — better than pivoting does — and returns an answer wrong in the fifth digit.

sparsity · Sparse pivoting
545545545455554545545545545454555555454545545545545455554545545545rows and columns, in the order the points arrivedark: kept dense · light: two thin factors, rank printedthe strong partitionblocks112kept dense46largest rank5numbers stored2.7·10⁴relative compression error3.4·10⁻¹⁰the picture is decidedbefore a number is read

Which pairs are allowed to be small

A hierarchical representation is a partition of the matrix into blocks, and the rule that produces it reads four numbers per pair of index clusters and not one entry of the matrix. On a 256-square it yields 112 blocks, 66 of them stored as two thin factors, none of rank above five.

hierarchy · Admissibility
the bound211no pivoting127τ = 0.00198τ = 0.003100τ = 0.01106τ = 0.03111τ = 0.1116τ = 0.3117τ = 1138entries in Ua bound, and its slackthe bound, from the graph alone211the worst that occurs138loose by1.5no arithmetic was done to compute the bound — only the pattern of AᵀA and its elimination graphGeorge and Ng: U fits inside chol(AᵀA), whatever the swapsprovable, cheap, and loose

What the symbolic phase can only bound

Without pivoting, the fill can be computed from the graph and the count is exact — 233 predicted, 233 measured. With pivoting it is 233 predicted and 242 measured, and what survives is a bound that is right at every threshold and loose by 1.7 times at the largest grid drawn.

sparsity · Sparse pivoting
-18-15-12-9-6-300log₁₀ ‖PKPᵀ − LDLᵀ‖ / ‖K‖share of orderingsbestworstexistence and stabilityfactorise1unregularised0.69worst growth6.4·10⁵growth × γ0.64the ordering is free to chooseand not free of consequence

The regularisation that legalises every order

Perturb a saddle-point matrix's two blocks in opposite directions and it acquires a factorisation with a diagonal D under every symmetric permutation — not under a good one, under all of them. Five hundred random orderings, five hundred successes, and a growth factor that spans six orders across them.

constraint · Quasi-definite
02468101210⁻¹⁸10⁻¹⁶10⁻¹⁴10⁻¹²10⁻¹⁰10⁻⁸member of the sequencebackward error of the solvefresh order · equilibrated kept orderringed: another pivot replaced hereone order, two sets of unitsfresh order, last member9.5·10⁻¹⁷kept order, last member4.8·10⁻⁹equilibrated, last member6.5·10⁻¹⁷pivots replaced, kept2pivots replaced, equilibrated0the perturbation floor √u1.1·10⁻⁸a reused pivot order is safe or notdepending on what the rows are measured in

The order that was right last time

A pivot order computed once and reused across a sequence saves the symbolic phase, and the price is that a pivot which was large may now be small. Replacing it with √u·‖A‖ costs eight orders of backward error and iterative refinement recovers a factor of 8.8 of them. Divide each row by its largest entry first and the same reuse costs nothing at all.

sparsity · Sparse pivoting
-1-0.75-0.5-0.25010⁻¹⁷10⁻¹⁴10⁻¹¹10⁻⁸10⁻⁵10⁻²10¹10⁴log₁₀ σ — the barrier's reduction factorresidual after one reused stepconvergedthe pattern free, the factors notentries moved6off-diagonal0survived at σ = 0.996survived at σ = 0.106 steps0 stepsthe few entries that movedare the ones that dominate

What survives one step of the barrier

An interior-point method solves the same system dozens of times with the same pattern and different numbers, and exactly p entries change between one step and the next. The pattern is reusable for ever. The factorisation is reusable for none of them, and the threshold that says so is a reduction factor of about a per cent against schedules that use ten.

sequence · Reuse
natural113 predicted · 113 countedminimum-degree63 predicted · 63 countedreverse Cuthill–McKee63 predicted · 63 countedthe shaded entries are fill: zeros of K that the factorisation makes nonzeroallocated before the numbersnatural113minimum-degree63reverse-cuthill-mckee63predicted minus counted0the symbolic phase decides the memoryand nothing later is allowed to argue

An ordering that does not wait for the numbers

A sparse factorisation's memory is decided by an ordering computed from the graph, and its stability by pivots computed from the values, and the two decisions fight. On one family of matrices they do not — the ordering can be chosen for fill alone, and the fill the symbolic phase predicts is the fill the factorisation produces — exactly, not as a bound.

sparsity · Sparse pivoting
6101418222610³10⁴10⁵grid side karithmeticND, totalMD, totalMD, critical pathND, critical pathdashed: the time on unbounded processorsthe same time, bought with more work

An ordering that buys processors, not time

Nested dissection loses to minimum degree on fill and on total work at every grid either measurement could draw. Read along the elimination tree a parallel factorisation works on, it does not win back the time either: its critical path is within 28 per cent of minimum degree's at every size from 8 to 24 points a side, in both directions, and the tree heights and widest columns are nearly the same. What it wins is the ratio. Its total work over its critical path — the most a factorisation on unbounded processors can speed up by — grows from 2.7 to 4.5 while minimum degree's stays between 2.1 and 2.6.

sparsity · Ordering
least possible76minimum degree76worst of 300 tie-breaks81reverse Cuthill–McKee85natural order9920 unknownstie-breaks at the least0.44minimum degree ÷ least1every order searched, by the set already eliminatedthe greedy rule found the minimum

The least fill there is

Finding the elimination order with the least fill is NP-hard, and that is a statement about the hardest graph and the largest size. On a graph of twenty vertices every one of the 20! orders can be searched at once, through the million sets of vertices already eliminated, and the least fill is a number. On the 4×4, 4×5 and 3×7 grids minimum degree finds it exactly. On eighty random sparse graphs of eighteen vertices it finds it on 53 and misses by at most 7.6 per cent, and on every one of the eighty some breaking of its ties finds it.

sparsity · Ordering
all 2^16 subsets searchedboth minima, one order0.97minimum degree optimal0.82worst fill overshoot1.1worst work overshoot1.111.021.041.0611.041.081.121.16fill ÷ the least filloperations ÷ the leastovershoot squaredon the diagonal: the two overshoots are equalon the upper curve: the arithmetic overshoot is the square

Two minima that are one minimum

The order that decides the memory found the operation count behaving like the square of the fill, which leaves room for an order with slightly more fill but a shorter heaviest column to do less arithmetic. Searched exactly over every elimination order on forty graphs, that order does not exist: one order attains both minima on thirty-nine of forty, and on the fortieth the least-fill order's arithmetic is 1.0099 times the least. Minimum degree attains both on the same thirty-three graphs and neither on the same seven.

sparsity · Ordering
total operationswork, no dissection10⁵work, full dissection1.5·10⁵work, one level1.3·10⁵on unbounded processorscritical path, no dissection4.1·10⁴least, at depth 43.4·10⁴critical path, one level5.4·10⁴10⁵switching depthoperations01234568total operationscritical pathdepth 0 is minimum degree, depth 8 is nested dissectiondepth 1 is worse than both

The depth that is worse than both ends

Nested dissection to a chosen depth and minimum degree below it is the ordering codes ship, and sweeping the depth was supposed to find a setting that keeps most of dissection's parallelism for most of minimum degree's work. It does not exist: total work rises with the depth at every grid size, and one depth — the first — is worse than both extremes on work and on the critical path at all four sizes measured. One bisection buys nothing because there is no recursion under it to amortise the separator.

sparsity · Ordering
80 matrices, τ = 0.1, ties to the largestno column search, median fill244one column136every column109share of the gain at one column0.804896144192240columns the search may look atmedian fill123468121624allno column search at allmedian fillmedian growthworst growth — see the captionthe fill is the quantity the width buysthe worst case is the draw

How few columns the search needs

A full row-and-column pivot search is quadratic in the active submatrix at every step, and no library performs one. Looking at a single sparsest column takes the median fill from 244 to 136 where the full search reaches 109 — four fifths of the benefit for a linear scan — and that share is 79, 83, 80, 89 and 92 per cent across five thresholds. The worst growth appears to favour the narrow search by a factor of six, and on the next draw it favours the wide one by two.

sparsity · Sparse pivoting
rows and columns, from the coordinateslevel structures, from the graph aloneseparator, level 1separator, level 2separator, level 3same vertex count in the first cutdifferent pieces under it

The halves were the price

One level of nested dissection followed by minimum degree was worse than both no dissection and full dissection on a grid, and the explanation offered was the separator's dense block sitting on every path. That predicted a sign: a separator found from the graph, rather than read off the coordinates, should make the penalty larger. It makes it smaller at every size — 44,116 against 53,508 at 24×24 — and the separator is not where the difference is: both first separators have 24 vertices and cost exactly 4,900. What differs is the path through the halves. Minimum degree takes 48,608 through a rectangular half of the 24×24 grid, longer than its 41,072 through the whole grid, and 39,216 through a triangular one.

sparsity · Ordering
8 × 8 gridstatic saving, none small0.31static saving, three in ten0.0300.10.20.30.40.5350400450500550share of diagonal entries made smallentries in the factornatural orderstatic minimum degreesparsest, every stepmedians over four seedsthe order fixed in advance stops fitting

An order fixed before the numbers

On a saddle-point matrix whose constraint rows have no diagonal, taking the sparsest pivot at every step beat the natural order on fill and growth at once, and the reading was deferral: the constraint rows go last and have filled in by then. A code computes its ordering once, from the pattern. That static minimum-degree order holds fewer entries than re-reading the degrees on fourteen of sixteen settings, growth under two throughout — and it does not defer. It spreads the constraint rows through the elimination, each after two thirds of its own variables. Scatter small pivots through a grid instead and the plan is refused on up to 25 of 64 steps; its saving falls from 31 per cent to 3.

sparsity · Sparse pivoting
share of the saving recovered6 × 6, revised, worst0.978 × 8, revised, worst0.8510 × 10, revised, worst0.6600.250.50.7511.25small diagonal entriesshare of the saving recovered5%10%20%30%6 × 6, static6 × 6, revised8 × 8, static8 × 8, revised10 × 10, static10 × 10, revisedsolid: 8 × 8 · dotted: 6 × 6 · dashed: 10 × 10re-planning at refusals recovers most of it

A plan redrawn where it was refused

A symmetric indefinite factorisation planned once from the pattern loses its fill saving as small pivots are scattered through the diagonal — on an 8 × 8 grid it keeps 74 per cent of what re-reading the degrees at every step saves at one small pivot in twenty, and 20 per cent at three in ten. Redraw the plan for the remaining rows only when the pivoting criterion rejects the planned pivot, and it keeps 85 to 100 per cent at every share up to three in ten, reading a tenth to a quarter of the rows the step-by-step rule reads. Each redrawn plan heads off refusals that would have followed it: 3 re-plans where the fixed plan was refused 7 times, 9 where it was refused 17. Where the plan was never refused, redrawing costs nothing — and with half the diagonal small, no plan of any kind beats the natural order.

sparsity · Sparse pivoting
saving with half the diagonal small, %scattered, static, at half-4.3scattered, revised, at half-4.1clustered, static, at half13clustered, revised, at half14-0.100.10.20.3small diagonal entriessaving over the natural order5%10%20%30%50%fixed, scatteredredrawn, scatteredfixed, clusteredredrawn, clusteredsolid: clustered · dashed: scattereda region keeps the plan, not breaks it

A small pivot with a small neighbour

A fill-reducing plan computed from the pattern loses its saving as small pivots are scattered through a symmetric indefinite matrix, and redrawing it where the pivoting test refuses it wins the saving back. Gather the same small pivots into one region and the prediction was that the fixed plan would do worse, because a whole region's ranking is wrong at once. It does better. On 8 × 8 and 10 × 10 grids the fixed plan is refused 0 to 6 times with the small pivots clustered, against 7 to 19 scattered, and at three in ten it saves 10 and 23 per cent of the natural order's factor where scattered it saved 3 and 9. The reason is in the Bunch–Kaufman test: a small pivot whose neighbour is also small cannot be passed over for that neighbour, so the test pairs the two into a block that keeps the planned row. Both plans still save something with half the diagonal small. And the step-by-step sparsest rule, best of all when the small pivots are scattered, falls behind the redrawn plan in a cluster.

sparsity · Sparse pivoting
8 × 8scattered, refused at 30%17along lines, refused at 30%8in a disc, refused at 30%3050100150share of the diagonal that is smallentries added to the fixed plan's factor0%5%10%20%30%50%scatteredalong linesin a discthe badge counts refusals, which the curves do not followthree layouts, one cost

A refusal has no fixed price

A symmetric indefinite factorisation planned once from the pattern is refused by its pivoting test where small diagonal entries sit, and the earlier essays read the refusal count as the plan's cost: scattered small pivots were refused 7 to 19 times and saved little, clustered ones 0 to 6 and saved much more. Put the small pivots along lines, each with two small neighbours, and the prediction of one refusal for every three small entries holds — between 0.25 and 0.42 on every share and grid. The rest of the reading does not. From a fifth of the diagonal up, the three layouts add within a factor of 1.6 of the same number of entries to the fixed plan's factor while their refusal counts differ by three to seven times. What moved the earlier savings was the baseline: the natural order's factor changes with the layout too, by 13 per cent at three in ten, and on the 10 × 10 grid the lines 'save' 19 per cent where the scatter saves 9 — with fixed-plan factors of 907 and 898 entries.

sparsity · Sparse pivoting
-4004080120160200share of the diagonal that is smallextra entries from interchanges5%10%20%30%50%scatteredalong rowsalong columnsin a discsolid: 10 × 10 · dashed: 8 × 8the row lines pay for the natural order's interchanges

The baseline was the interchanges

Small pivots along grid rows gave a fixed fill-reducing plan twice the saving over the natural order that scattered ones did, for a factor of the same size, and the reading was that the natural order did badly on rows. Turning the lines to run along columns was predicted to bring the natural order below 1,000 entries, leave the plan within 3 per cent of 907, and drop the saving to the scatter's. It misses on all three: 1,008, 977 and 3.1 per cent. What the natural order paid for on rows was its own interchanges. Offered by position, as a dense code offers it, every Bunch–Kaufman interchange moves a row out of sequence, and on rows that costs 125 entries at three in ten and 191 at half — the most of any layout at every share. Kept to the grid's index, the natural order barely notices the layout, and the row lines' saving halves to 9.0 per cent.

sparsity · Sparse pivoting

Named alongside it

The objects these essays reach for when they reach for this one.

Fill-inMinimum degreeFill-reducing orderingGrowth factorSparse pivotingSparsityBunch–KaufmanElimination treeSaddle-point systemsSymmetric indefiniteElimination graphFlop count

All concepts